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Starting beamline control panel; changing photon energy and polarization; adjusting Rx of SMU
Usually the window of beamline control panel is always open on the left monitor. If it was closed you can find the golden star icon in the taskbar. Alternatively you can use the icon for BLC on the left screen:
Main menu displays the outline of all beamlines coming from UE112 undulator:
Switching Mirror Unit (SMU) is used to switch beam between two main branches, our branch is PGM2. Click on "SMU" button to open the control panel and make sure that circle in front of "PGM2" is green:
If it is not, then make sure that:
your neighbors at PGM1 finished their work
the beamshutter is closed
After that press the square button in front of "PGM2" to get the light and wait until "PGM2" indicator turns green.
If beam is directed to a wrong branch, beamshutter will not open.
SMU_2 switches beam between 1-Squared (dsl) and 1-Cubed (dsr) endstations.
Last letter in dsl/dsr means "left" or "right" if you look from the ring towards the endstation.
Click on SMU_2 in the main menu and make sure that the green circle is in front of dsl (1^2):
If it is not, then make sure that:
your neighbors at 1-Cubed finished their work
the beamshutter is closed
After that press the square button in front of "dsl" to get the light and wait until "dsl" indicator turns green.
After finishing your shift it is a good tone to switch the beam to your neighbors, this way you tell them that you finished and they will not need to worry about step #1.
Open the blue panel by pressing UE112-PGM2 button in the main menu, insert the required value of photon energy in the field Energy (eV). While inserting values cursor should remain inside the field. Press enter. After that monochromator will be set to the specified photon energy and undulator gap will be adjusted according to the loaded ID table (ID=Insertion Device).
ID tables are different for each light polarization! Make sure that you are using the right one (see section about light polarization for more details).
In the top left button you should see ID On, if ID is Off, then only monochromator will move resulting in a very low intensity.
If you see error "ID is local" please check this section.
After changing the photon energy beam will deflect from optimal trajectory and start hitting one of the beamline slits (one can see it on the top-right monitor). To fix this and recover full intensity of the beam go to SMU112_1 panel and press SMU/experts -> PGM2.
! Important !
Use only SMU112_1 that is closer to the ring! Not SMU112_2! If you moved wrong SMU, it is not critical for operation, but don't forget to tell the beamline scientist, then correct parameters can be recovered.
The following panel will appear:
Use only the middle parameter (M3 Left Rx) and change the value using + or - until you reach maximum photoemission intensity.
Use step 1000 for large changes in photon energy and 200 for fine tuning.
Actual value of Rx is shown on the left (in the picture it is 203300, not 191200), you can write it down for you favourite energies. Value in the box is just what you entered last time.
Press button "!" on the right from "Select ID table" in the blue panel. After some time the following panel should appear:
Choose one of the options in the drop-down menu "Select Light:" and press button "Do it!". After it says "Done!" go to blue monochromator panel, click inside the energy field and press enter (even if you did not change the photon energy value). This will start movement of monochromator and undulator with respect to the new table. Movement can take some time, wait until blue panel shows "Ready".
To check the actual status of undulator press the big button UE112 on the very left of the main menu. This panel is mainly useful for troubleshooting. First of all, "ID control:" should be remote. Sometimes after machine group restores the beam they need to open undulator gaps and they control IDs "locally", i.e. from the control room. After the beamshutters are open again, the "ID control:" may remain in "local" status, then you must change it to "remote" using this panel.
You can also directly check the gap value and the values of undulator shifts that are used to control light polarization (linear horizontal polarization should correspond to shifts of 0).
Rules of thumb about the directions: If you increase , the Rx value should be reduced and vice-versa. If you see the beam to the right from the slit, you need to increase Rx and vice-versa.
Tip: circular polarisation can be used to suppress the second harmonic signal (e.g. if you see core levels in the valence band or above the Fermi level, they are most probably coming from the synchrotron radiation with doubled energy ).
How to change the reference positions of 6 manipulator axes
In case of problems with communication between the MultiAx program and the manipulator it can happen that calibration of the axes is not correct anymore. It may happen, for example, if you see that coordinate values in the MultiAx window are changing while motors are not actually moving.
To recalibrate one axis go to Settings tab and type in the password (provided by the beamline scientist), then press the Unlock button.
Select the axis and press begin calibration. Set the actual position as determined from the rulers on the motors or visually from the camera image.
Move x and y to 4 mm on the rulers --> recalibrate x=0, y=0; Alternatively, read the values on the rulers (arrows mark positiove direction, 4mm mark is 0)
Recalibrate z according to the value on the z ruler;
Use tilt to position back side of the manipulator head vertically --> recalibrate tilt=0;
Align the 2 vertical wires (left camera screen) by polar (correct for backlash) --> polar=0;
Rotate the sample towards the camera by polar and use azimuthal rotation to make sample holder top edge horizontal (correct for backlash) --> azimuth=0.
Press confirm.
After this axis coordinate will be saved and calibration panel will be locked automatically.
After recalibration your saved positions will not be very precise anymore because of the errors in determination of the positions. Center of rotation for polar map XY correctons may be also slightly shifted.
...
There are two special positions stored in the "Positions" tab: TransferPrep and TransferAn, these are standard positions in Preparation and Analysis chambers, respectively. Automatic movement of manipulator between these two positions is considered safe.
To move from Preparation to Analysis chamber first move to TransferPrep, then after all axis have moved, move to TransferAn position. And vice-versa for opposite direction.
Before moving from Preparation to Analysis chamber first make sure that there are no obstacles in the Preparation chamber (heater, quartz microbalance etc are retracted) and open the valve between the chambers.
Even though it is safe, manipulator should not be left unattended while it's moving!
If you put your own equipment, avoid loosely hanging cables.
Movement is safe unless the calibration of manipulator is correct. If you had to use the big red emergency stop button or for any other reason you suspect that coordinates may be wrong, contact the beamline scientist.
If this happens, first thing to do is to press the emergency stop red button. It will cut the power from motors.
Then call the beamline scientist to help. Solution of this problem is currently not available for users.
Before starting the measurement select a proper analyzer slit (black knob on the analyzer).
Narrow slit: + better k-resolution perpendicular to the slit - more difficult to focus and less counts. Curved slit: + flat Fermi level and constant energy surfaces - makes a curved cut in k-space Straight slit: + makes a straight cut in k-space - curved Fermi level (energies need to be corrected programmatically).
We usually start with 400.
850 = Fully open, only for pumping down!
Beamline (BL) exit slit vertical width is controlled manually with a knob behind the electronics rack.
With a smaller slit you improve energy resolution, but get less counts.
Plateau area (~140um) is a good starting point.
Beamline resolution for a given BL exit slit and photon energy can be estimated using an Igor script provided below (beamline parameters correspond to 1^2):
Checklist for operation of load lock
1. Close all valves connected to the turbo pump: to exchangeable ports, to gas line and to load lock.
Important! When closing the valves to the turbo pump check and keep in mind what else is pumped with the same pump (e.g. bakeout of exchangeable evaporators). It will not be possible to open these valves for about an hour while load lock is being pumped.
2. Make sure that the valve between load lock and preparation chamber is fully closed.
3. Stop turbo pump by pressing on-off button. Leave the prepump (membrane pump) running.
4. Close the valve between the turbo pump and load lock (VLL).
5. Check the pressure of N2 bottle inside the cabinet. The pressure of should be positive and non-zero (*).
6. Loosen the screw on the load lock door. Vent load lock by opening the valve, at some point door should open by itself. Leave the valve open to keep some gas flow.
7. Insert your samples in the load lock transfer rod (using e.g. long pliers). Rotate samples hook-up!
8. Close the valve properly.
9. Make sure the viton ring on the load lock door is clean and then close it.
10. Check that turbo pump has stopped completely. Slowly open the valve between pump and load lock. Air should be quickly pumped by the working membrane pump.
11. Wait for pressure to reach 5 mbar (**), and then start turbo pump.
12. Wait for pressure to reach at leastmbar (usually after ~60 minutes).
Rule of thumb: pressure in the preparation chamber after opening the load lock valve will be ~50 times better, i.e. mbar.
13. Close the VLL, and open the valve to the preparation chamber.
14. Check that nothing is on the way of the load lock’s rod, and then move the rod to the chamber.
15. Transfer your sample to the chamber using the wobble stick, retract the rod, and close the valve between chamber and load lock.
16. If you want later to remove your sample from the chamber, then do not forget to open the VLL, to leave the load lock pumping.
17. Check what else should be pumped and don't forget to re-open the respective valves that were closed at the step #1.
18. Enjoy the experiments!
Troubleshooting:
* If pressure in bottle is 0 or negative.
Check that the valve on top of the gas bottle is open. If nothing helps and user support is out of reach, you can close the valve and vent load lock to air by opening the door by force (e.g. using a screwdriver).
** If pressure does not reach 5 mbar after few minutes, check that the door and valve are properly closed.
Preparing for beamtime
Samples should be attached to the sample holder in a way that guarantees electric connection between sample surface and the sample holder, e.g. (depending on the sample type): with conductive glue, conductive scotch tape, spot welding of pieces of metallic foil, mechanically with screws and nuts, etc.
Sample holders: Omicron flag-type (molybdenum, copper, for some samples stainless steel is also OK, but not recommended).
Standard conductive silver glue: EPO-TEK H21D. Mix by weight 10 A : 1 B, recommended cure 150C / 1 hour (see more details).
Sample holders of several types and mounting options described above are generally available directly at the beamline. If you want to prepare your samples in advance, please check the following.
It is recommended to use sample holders with "ears" (see Fig. 1 "ears" are protrusions on the sides at the top edge of the sample holder). Without them sample holders will fall through the sample positions in the sample magazine under the heater. Except for this limitation, it is still possible to use sample holders without "ears", there is no fall-through problem neither in the load-lock nor in the manipulator.
Areas on the sides of the sample holder should remain clear, area available for sample mounting is shown with a red rectangle in Fig. 1. The sample itself and all holding/fixing components (e.g. glue, foils, screws etc.) have to be within this area.
Red cross marks ideal sample position. Thickness of the plate d is also very important (0.95 mm <= d <=1.05 mm).
For annealing at temperatures above 800C one should use high-temperature heating stage, in this case sample holder should have additional holes on the edges (red circles in the Fig. 1).
After all the modifications, especially if holes were drilled or screws used for sample mounting, check the back side of the sample holder. It should remain flat, nothing should stick out of it.
To avoid dropping top posts in the analysis chamber use a short piece of thin conductive wire and glue (or fix) its one side to the holder and another to the top post.
Make sure that all parts are conductive and the wire has no layer of insulation (for copper in kapton it is not always obvious). Otherwise, not grounded top post will be charging and its field will be deflecting emitted electrons and affect the measurements.
If you are not sure what is the best option for your particular sample, or need other help regarding sample mounting, please contact the beamline scientist (Andrei Varykhalov) for additional support.
Load-lock has a passive magazine with 3 sample slots mounted on a magnetic transfer rod. It can simultaneously accommodate up to: 2 samples with long (up to 10 mm) top-post OR 1 sample with long top post (10 mm) and 2 samples with short top-posts (5 mm)
There's a sample magazine for 3 sample slots in the preparation chamber. You can store there only sample holders with "ears". Magazine is mounted at certain angle, in order to fit the pitch angle of the wobble stick, and sample without notches will simply fall through.
Guidelines and checklists for users of ARPES 1^2 endstation.
The most general information about the station can be obtained by the following links:
Things to do when you finished with one sample or shift is over
Switch off analyzer electronics and close the beamline valves (starting from Beamshutter). For a short break (e.g. while changing samples) it is enough to close experimental valve and beamshutter;
Close valve between the chambers;
Close the needle valve of liquid helium transfer line;
Open the valve on the helium dewar to helium recovery line (or connect it);
Stop helium pump ("FP Helium" button on the panel at the back side of 1^2 frame);
If you are leaving:
Remove all the unnecessary marks on the screens
Remove sample names from the magnets on the wall
Remove files from desktop to your User folder
...
...
Open the valve between Preparation and Analysis chambers;
Bring sample into measurement position in the Analysis chamber;
Make sure that beam is not used and beamshutter is closed;
Take the beam using Beamline Control;
Set light polarization, photon energy, [width of apertures (optional)];
Check that suitable beamline exit slit and analyzer slit are being used;
Setup SES program (data types, folder, sample name, etc.);
Switch on analyzer electronics by tumbler and open the beamline valves (starting from Experiment);
Open in the SES menu "Calibration" -> "Voltages" and set kinetic energy where you expect to see the bands;
Find signal from the sample using joystick and camera images. Sticker roughly marks position of the beam (camera image under the sticker should be in focus).
Fine tune the position using MultiAx "Manual/Steps" or "Virtual axes" tabs. Y direction is along the beam (use for focussing).
Have a lot of nice measurements!
Controlling monochromator via software to measure kz dependence
To perform an automated photon energy scan:
In the MultiAx window open tab "Mono corrections"
Tick activate
In the CommPort | MONO block check that COM2 is selected and click Connect.
Check the current photon energy, the value should appear in the yellow box (Position [eV])
In the SES window create a new CIS region, press Edit, set start/fin values of hv and step
In CIS mode energy values are set as Binding energy! E.g. Fermi level is around 4.5 eV.
Before starting a scan make a test run and make sure that the intensities are reasonable at all photon energies in the range. Ideally one can adjust the intensity manually for each photon enrgy by the beamline exit slit or beamline apertures. Also control the beam position by adjusting the SMU.
Most common modes of data acquisition; tips and tricks; known bugs; troubleshooting
Find the SES icon on the left monitor of measurement PC (or in the taskbar):
Allow windows to run the program.
Press test connection, you should see a reply in the MultiAx log panel (at the bottom of the window). Press OK.
Again press test connection and see the reply. If reply did not appear, there is a communication error, please contact beamline scientist for further instructions. Press OK.
SES window should appear.
Go to Run - Setup menu. Specify region of measurements parameters.
Save the full list of regions (so-called sequence) as a .seq file to your experimental folder.
A map will always start with a number of regions twice as big as the number of points. This causes an error message in the end of the map. When it asks "Discard and proceed?" press No.
Sometimes after mapping you can get not a usual "Out of bounds", but another error about some DLL with "AddData" in it's name. In this case file is probably not saved. To fix this issue restart the program.
It is recommended to try to save a short test map before each map that you measure, in this case you can at least make sure that the program was working right before you started the map.
P-axis should be selected as major, otherwise polar angle values will not be written in the datafile.
Scale fields should be identical to P-axis fields, otherwise polar angle values in the datafile will be wrong.
If number of polar angle steps was changed or a new mapping region was created, map has to be started, immediately stopped and started again. Otherwise it will measure a wrong number of polar angles (see left bottom corner of the measurement window, for map with N steps it should show "1/N", if it shows "1/1" - it will stop after 1 sweep)
Problem: cannot start a map because SES immediately shows an error. If this cannot be cured by restarting SES, then measure one single spectrum and let it finish (not a "Manipulator scan" region, but "Normal"). After that it should be possible to measure a map again.
From time to time the following or similar error message may appear:
Access violation at address 004ED730 in module 'SES.exe'. Read of address 06D7C5EC.
Usually it can be fixed by stopping the experiment and restarting SES program.
While SES is closed try to unplug and plug again the black USB cable from the USB-RS422 adapter with yellow sticker that goes to measurement PC (you can find it behind the monitors, see photo below).
Error "12001: no contact with 7048 processor at adress 0" Trying to shutdown SES programm causes it to freeze.
Solution: try to unplug and plug back the cable from USB-RS422 adapter (see above).
Making a file with X-Y corrections for polar rotation based on 1 optimized point
Recently X-Y corrections were implemented in MultiAx directly, this document is outdated
Axis of the polar rotation is generally not passing through the sample surface. Because of this during the rotation the sample will move away from the focus of the analyzer (and the beam). This can strongly affect polar maps measured in large angular range, especially for small samples.
A way to cope with this problem is to adjust the sample's X/Y position for each new polar angle. To find the correct X/Y for each angle you can first optimize sample position manually for a set of polar angles inside the range of interest and then use them as a reference with interpolation in between (see MultiAx polar corrections tab).
Theoretically it is possible to do good manual optimization only for one point (in the middle of region of interest) and calculate all other X/Y positions based on this point and the position of polar rotation axis.
To do that find the following icon on the desktop of the left PC:
You can also find the file here. (here goes a description how to use it with a screenshot...)
This will create polar corrections for +-40 degrees from the point with good optimization and with step of 2 degrees. Press "Save".
Finally in MultiAx Polar corrections tab press Load File button and select the file "XY-correction" (it should be on top if files are sorted by date).
Manual adjustment is best for small or non-uniform samples where precision is important
Automatic adjustment will work best for middle-sized to big uniform samples.
Help for beamline scientists in troubleshooting
Close connection in MultiAx (tab Settings)
Manipulator -> OFF (button on the back panel, next to LL vacuum gauge)
Release the red button
Wait 30 seconds
Manipulator -> ON
Watchdog -> OFF. You will need admin password for this.
Open connection in MultiAx
Watchdog -> ON.
The screws on the manipulator head (left photo) can be tightened to provide a better thermal contact while cooling for the samples that require lowest possible temperatures. Vacuum screwdriver is located in the Preparation Chamber, close to the heater (right photo).
Move manipulator to preparation chamber;
Close the valve between the chambers;
Go to a saved position "screwdriver" or rotate manually tilt and polar angles;
Do not apply force! Just screw until the end without making it too tight;
Return to "Transfer_PREP" position.
To take your sample out later you will need to loosen the screws by ca. 2 full turns.
Using manipulator heater to set sample temperature
Make sure that Contol A LED is on (the coldfinger temperature will be used as a reference).
On the Lakeshore TC press Setpoint button (6).
Dial in the desired temperature for coldfinger (A)*. Sample temperature will be ~10 deg higher.
Press Enter.
Press Heater Range button and select power. Start with low, if it is not enough - try medium.
Press Enter.
Find below an approximate table of correspondence between A and B temperatures.
10
19.5
low
18
25
?
24
30
med
29
35.2
med
33.1
40
med
37
45
med
41
50
med
45.3
55.2?
med
49
60
med
57
70.5
high
85
100
high
Tips and tricks
When you move anything in the chamber, it is a good rule to always look inside at the thing you are moving.
Be gentle and don't apply too much force. If you have to pull/push too hard - you are doing something wrong. If sample holder is not sliding into/out-of the position with minimal force, it means that most probably the angle is not perfect. Try to adjust manipulator/heater positon and repeat.
If you pull very hard while trying to take sample out the clamps of the wobble-stick may open leading to unpredictable consequences.
Never push cold sample deep inside the LT-heater, it will expand and get stuck! The same goes about RT sample and hot heater. Check that edge of the sample holder is in line with the edge of the heater slot.
//photos of good and bad positioning of the sample
If sample got stuck and it looks like photo 2, try to push the hook from below with a flat side of the wobble-stick (method 1). If this helps to release the bottom front corner of the sample holder, you will be able to pull the sample out.
If this doesn't help, one can try to follow the procedure below:
Wait for sample to cool down. Check if you can pull it out (try method 1).
Try to reach high T quickly, e.g. put 3A (max T should be ca 650C).
While it's heating hold the hook and give it a short but strong pull every ca. 5 sec.
At some point sample will jump out, be careful not to drop it! Ideally movement should be short enough so that sample holder stays partially in the heater. Wobble-stick clamps can open! Try to pull not too strong and try to keep pull vector in the horizontal plane (small deviations to left and right could help, but don't move up and down).
draft of a page about cleaving
Top-post: How to connect it to the sample holder Scotch-tape: How to prepare a tape with a wire
For sensitive samples it is preferrable to cleave in the analysis chamber. There is a wobble-stick without a clamp from the side of the load-lock. Use a saved position called "Cleave". It should first move sample away from analyzer lens, then rotate it to -60 deg polar angle. Check in the camera that manipulator doesn't hit the lens! In this position it should be possible to cleave sample with the wobble-stick. After cleave use saved position "After cleave", it will first rotate polar back and then move x,y.
Do not use "Transfer-to-An" position after cleave! It will first move x,y and then do rotation of the polar, which is dangerous.
...
Preliminary setup and change of the dewar should be done together with a beamline scientist. This instruction is only for the case when the needle valve is already inside the dewar.
Check that helium line is deep inside the dewar, ca. 5 cm above the bottom.
Check that Helium pump is running (see panel inside the frame from the side of the load lock):
3. Check that black valve below the frame is open:
4. Make sure that helium recovery line is connected to a He return port on the wall-panel.
5. Use ladder and open the needle valve 1 full turn. Rotate counter clockwise if you look from below.
6. Wait until temperature reading starts to steadily go down by 0.01 K. If this doesn't happen in 10 minutes - it is likely that there is a problem (*).
7. When sample temperature reaches ca. 40K start closing needle valve in small steps and wait for the temperature to stabilize. Try to close as much as possible to reduce helium consumption, but don't let temperature to go up.
8. The lowest temperature reading is ~12-20 K.
To reach the lowest possible temperature on the sample one can improve thermal contact by tightening the screws on the sample pocket of manipulator head. See here for more details.
Check that helium line is not at the very bottom of the dewar. If it slides down, retract at least 5 cm back. This way there is less chance that it will freeze inside.
Make sure that the needle valve part is straight, if not - adjust the support.
Underpressure in the LHe dewar should be avoided at all times! If this happens, air can reach inside the dewar and moisture will turn into ice that freezes on cold parts inside. This ice can block helium line from moving, then it cannot be neither closed normally nor taken out to change the dewar. Too much ice may lead to a dangerous condition!
(*) As a first step try to disconnect helium recovery line from the wall and check if there is a flow of gas coming out of it.
How to use ion gun for surface preparation
IMPORTANT: BEFORE SPUTTERING! Close the valve between the two chambers and switch off any high voltage (LEED, high temperature heater, evaporators, etc).
❗ DANGER: Close the valve between the two chambers and make sure that it is closed.
Sample can be sputtered either in the manipulator or in the low-temperature heater. Set the sample in the sputtering position by placing the manipulator/heater in the center of the chamber, usually surface should be at 45° relative to the ion gun.
Check that there is a gas bottle with argon connected to a leak valve that goes into the ion gun. Before inserting Ar, make sure that gas line has been flushed several times, in order to prevent oxygen contamination on sample surface. See the checklist for flushing the gas line.
Insert Ar by slowly opening the leak valve ( mbar).
Switch on the power supply (SPECS IQE-11A, see photo below), check that the Energy knob is at 0 keV and set Mode knob to Operate. Check that the error LED "Filament fail" on the left is not on.
Slowly increase the electron energy to the required value (up to 3 keV) for the sputtering. Check that the LED for “HV Fail” is not on.
Finally, set the emission current knob to 10 mA.
After the sputtering cycle is finished repeat the steps 4-6 in reverse order: reduce Energy to 0 keV, put Mode to Stand by and close the leak valve.
Do not apply too much force to close the leak valve! It takes time for pressure to drop, be patient.
Check that both wheels of the leak valve knob are being rotated at the same time.
If it is not possible to raise the energy above 0.6 keV in the Sputtering Power Controller, check if the Extractor pin is grounded (towards external shield of the ion gun). It should not be grounded! If a finite resistance is present, let some current flow through this pin and ground until it is again isolated. ASK BEAMLINE SCIENTST FOR ASSISTANCE!
Sample characterization using Low Energy Electron Diffraction
Check that both LEED cables are connected, and make sure that LEED has been degassed.
Make sure that LEED is retracted and there is nothing in the way, then move sample to a saved LEED position (if available). Insert LEED while looking inside the chamber.
DANGER: For manual approach use the following order: first move polar angle, then move the LEED forward towards the sample, then move the y axis and finally adjust x and z. The final distance of the sample holder should be ... from the LEED electron gun.
Be careful when performing any movement: you can seriously damage the LEED if manipulator touches the instrument. Always look inside the chamber while moving! Be also very careful after you finish the LEED measurement: before performing any rotation move the y axis to 0 and retract the LEED.
Do NOT move LEED with opened shutter!
3. Open the LEED shutter gently, and fix it by turning the screw on the shutter handle.
4. Cover all the windows of the prep chamber with aluminum foil and cover the outer LEED window with a black cap (it has a small hole in the middle for eye or camera, see the picture below).
5. Switch on the LEED power supply (SPECS). Press down the Cathode knob and rotate clockwise until it clicks. Set cathode current to 2.4 A.
6. Slowly turn the Screen knob to the operating voltage (6 kV).
7. Roughly find sample position. Adjust the offsets of L1 and L2 lenses until you see sharp LEED pattern.
8. Set the desired electron beam energy with Energy knob.
9. When you finish reduce the Screen HV to 0V and reduce the filament current to 0 (until it clicks). Switch off the power switch.
DANGER: Move the y axis to 0, close the LEED shutter, move the LEED backwards, then move the polar angle. Watch all the movements closely!
Quick start guide: how-to and cheatsheet
Igor data files are called "waves". This is a quite universal format to store data that can be one-, two- or more-dimensional. The wave is more than just a multidimensional matrix with numbers, it also stores the units and dimensions for each axis, so for ARPES data you can operate directly in terms of energy and angle values instead of constantly referring to point numbers.
A lot of useful info can be found in Igor Help files.
First open Igor Pro (64-bit), then drag and drop the procedure files (click and hold mouse button on the icon, then move it to the Igor window while keeping the mouse button pressed). In the procedure window press "Compile", if compilation process is successful, "Compile" button will become inactive. Then you can either fold procedure windows or press cross to close them and (when asked), select "Hide" (not "Kill"!).
After you have all the necessary procedures, you can drag and drop waves into Igor window. Some of the waves may be automatically displayed.
Ctrl+I: brings graph cursors, you can use them to measure features' sizes in the image/graph. (First click on the window you want to work with)
Ctrl+J: brings the command line panel
Ctrl+B: brings data browser panel
Ctrl+A: Reset image view to see the whole image (to reverse zooming in)
Ctrl+D: duplicates a wave in the Data Browser (e.g. if you want to try to modify the wave, but keep the original as a backup)
To calculate something you can use command print
in the command line, e.g.:
To zoom-in to a certain area: select it by drawing a rectangle with left mouse button, then right-click in this area and press "Expand". You can also use "Horiz Expand" ("Vert Expand"), then it will keep vertical (horizontal) scale without change.
To select a different colormap: right-click on the image -> modify image. Recommended map is grays, however for posters and presentations with white background it is better to tick "Reverse colors". Other options to try are Mocha (reversed), CyanMagenta, Green, Mud, Terrain, etc. Play with it, but please use something with monotonous change in colors.
To change image dynamic range: Top menu -> ImageProcs -> Image Range... Useful e.g. to highlight some weak features
To take a line profile: Top menu -> ImageProcs -> Image Line Profiles... Select proper width, direction (Horizontal or Vertical) and position (one can drag blue line in the image by mouse to put it in the right place or change position value). Press "Checkpoint" to save the profile, it will appear in the Data Browser window on the left as a new 1D wave with "_Prof1" in the end of the name.
To change axis labels and style: double click on the axis (cursor should look like a double-sided arrow). E.g. to rotate tick labels go to tab "Label Options" and then change label rotation
Create a line profile at the area where Fermi level can be seen well (without sharp bands crossing Ef). You can increase the width to get a smoother result. Use Ctrl+I and put cursor on your 1D graph to select the fitting area (only part between the cursors will be fitted). Go to Top menu -> Analysis -> Quick Fit -> Sigmoid (Sigmoid definition in Igor Pro is analogous to a Fermi-Dirac distribution function.) In the command line panel (Ctrl+J) you will see all the fitting parameters printed out. xhalf value is the position where sigmoid curve takes it half-maximum value, i.e. chemical potential at the given temperature (close to the Fermi level).
Click in the window with 1D graph that you would like to fit to bring it in focus. Go to Top Menu -> Analysis -> Packages -> Multi-peak fitting Tick "From Target" to automatically select waves from the target graph. Press "Start Set". Then "Add or Edit peaks" to add peaks manually. You can select Gauss for peak type and draw peaks by mouse starting by clicking approximately at the apex of each peak. After all peaks are added (not necessarily very precise) press "Done" and then "Do Fit". You can see all the fitting parameters for each peak by pressing plus symbol next to the peak name.
If the Igor file with data analysis (so-called "experiment") was made on a large screen, then on a smaller screen some of the panels will be out of reach. You can bring them back by Top menu -> Windows -> Control -> Retrieve all windows.
Plotting and structuring your experimental results
It can be difficult to keep up with the stream of ARPES data coming from a synchrotron beamline. There are several useful procedures written in our department that can help, you can find them on the desktop of the right PC:
LoadLastWaveMenu, All IP rocedures, DimPages, ... .
We recommend to load all of them directly after creating a new Igor experiment and press compile.
Creates an additional menu that allows to select current experimental folder once and after that load and plot the last measured wave with one click. You can plot raw data, derivative or second derivative, also you can plot directly angle-averaged spectrum (useful for XPS measurements).
Old style Igor Image Processing procedures. This is required for LoadLastwavemenu to work.
Creates an analog of browser tabs for Igor, you can have as many pages as you need to structure your data. Pages can be renamed and sorted.
For analysis of ARPES maps we recommend to create a separate experiment file and load there DimPages and InclAll procedure files.
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Deposition of sub-atomic layers of alkali metals provides a method of continuous charge doping of the sample surface. In certain cases it allows to reach otherwise unaccesible in photoemission electronic states above the Fermi level (but not too far above, usually ~0.1-0.3 eV).
There is a permanently installed evaporator of potassium from the side of the wobble-stick. Other alkali metals, such as Na, Li and Cs are also available, but their installation should be discussed with the beamline scientist in advance.
There are two SAES Getters K dispensers installed inside the evaporator, their common point is grounded. Evaporator feedthrough has 3 contact pins: one on top and two at the bottom. The top contact is not used! Lower two correspond to two dispensers (K1 and K2). You need to connect "+" cable of the power supply to one of the lower contacts and "-" cable to the ground (e.g. any screw on the chamber).
Standard current is 5.7 A, which corresponds to a rate of ca. 1 monolayer in 2-3 min. Exact rate can be monitored by placing quartz microbalance close to the sample during deposition, this should be done very carefully to avoid collision!
Icon of the program
A tool for modelling of XPS peak positions, can be found on the desktop of the measurement PC.
hv, list of elements and work function -> peak positions on kinetic energy scale.
Modeled "intensities" correspond to tabulated ionization cross-sections.
Click on one peak to show information.
Click on one peak, then on another one while holding Shift -> get energy distance.
To see lines of all possible elements, write "all" in the list of elements.
On the desktop of the right PC there is an Igor experiment called "T log v ... .pxp" that can plot temperatures A and B of the cold finger and sample in real-time.
Make a precise manual XY correction, saving several snaps (minimum 2). Ideally use a small sample or some small feature that you can easily identify (e.g. corner of the sample). Mainly the polar range and precision of each snap influence the precision of the fitting result.
Save snaps as an ._xy file.
Use command LoadXY()
to load table of (p,x,y) values from the ._xy file as waves (wp,wx,wy).
Use command Calculate(wx,wy,wp)
The results of the fit will be printed in the command line and circle in the figure should be updated.
Working with maps using Emile's procedures
Download the Igor procedure here (later can be a link to repository):
Extract everything in the same place, then load InclAll.ipf and compile it. We recommend to use a separate Igor experiment for maps and load this procedure first. After it is loaded, you can drag and drop the wave containing the map inside the experiment window. After the wave is loaded a three-panel interactive window should appear:
energy -vs- slit angle ("front-view");
energy -vs- polar angle ("side-view");
slit angle -vs- polar angle ("top-view")
In the top row of the panel there are boxes (with up-down arrows), the values in these boxes control the third coordinate for each corresponding panel.
Troubleshooting: If the panels are blank, please check that the wavename in the data browser starts with a letter (e.g. "001r" is not a valid wavename). If not, you can add some letters in front (e.g. "001" -> "w001"), then go to Macros -> "Create Slice Panel ..." and select your wave.
Use cursors (Ctrl+i) and put them in "top-view" image to determine the high-symmetry direction that you want to be parallel to the slit. The following code will give you the angle of rotation.
! Important ! If you are using mapping to orient the sample and in the third image it looks like map is rotated azimuthally clockwise, then actually you need to rotate azimuth counter-clockwise by the same value (subtract misorientation angle from the current value).
From the Igor command line you can call function kWarp(w, Ek0, alpha)
wave w // name of your map-wave (3D (phi, Ek, theta) wave)
variable Ek0 // kinetic energy at which k-range boundaries are defined
variable alpha // tilt angle in degrees
You can put Ek0 equal to max. kinetic energy and alpha should be equal to the angular position of Г point along the slit.
Normal emission is supposed to be at polar angle = 0, if it is not the case, you can shift it by changing the Start value of the polar angle axis of the map wave.
The converted wave will have the same name as the original one, but with "kw" on the end, you can plot it using Macros -> "Create Slice Panel ..." -> select this wave.
Maps measured in fixed mode have very small step in energy, which makes it difficult to work with them. It is possible to "condense" such maps summing up the values in each N energy steps to one single point.
This can be done from Igor command line with function condensefixed(wname, Nrows, Ncolumns, Nlayers)
It will condense the wave corresponding number of times along three directions. Rows=angle along slit; Columns=kinetic energy; Layers=polar angle.
Example: condensefixed(w001r,1,10,1)
will condense wave w001r 10 times along energy axis while keeping two other directions intact.
The Slice Panel with condensed wave should appear. The condensed wave will have the same name as the original one, but with "rdx" on the end.
Tip: To reduce disk space occupied by the maps experiment one can use Killmaps(map_wave_name)
to get rid of the non-compressed map measured in fixed mode. All the panels displaying this wave should be closed in advance.
Press Ctrl+I when Slice Panel is in focus to show the cursors panel.
Put A and B cursors in the first image to specify energy range that you are interested in (for example somewhere at the top and somewhere at the bottom to have full range).
Right-click the cursors panel -> "Show cursors pair" -> "C D".
Put C and D cursors in the third ("top-view") image to specify the cut direction.
After that in Igor command line write ExtractCsrSlice()
This should produce a window with spectrum extracted along C-D in energy range specified by A-B.
You can generate XY polar corrections manually. To do this you need to know the coordinates of a one good spot on the sample and the coordinates of the center of manipulator rotation (one needs to them once precisely and then they should not change until next dismounting or recalibration of manipulator). This functionality is included in the current version of MultiAx, but in certain cases Igor version can be useful. It saves generated file in the "saves" folder of MultiAx from where it can be loaded into MultiAx. More info can be found .
here are some more questions to answer
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How to connect to User data folder remotely to copy files? One has to be connected to local WiFi or cable network. Then a network drive \\x-meteor.usd.bessy.de\UserData\ (???) can be added.
Where to eat around BESSY? During the day: Fastest option is Saida falafel kiosk. Other popular places include University mensa, Bagel company, Esswirtschaft (german), Mr Wu (chinese) and several others (google maps). During the night: Immergrün works until 8 p.m.. You can also order from Lieferando directly to BESSY (some places are open until 23-24). After midnight you can go to S-bahn station Adlershof to get a döner at Ibo's kebap. Or use vending machine in the cafeteria (but it eats money sometimes!). There is a kitchen at cafeteria and another kitchen in the building 15.8 (close to workshop).
How to get a key from the user fridge? Ask user office. (?)
useful phone numbers
1^2 team Maxim Krivenkov Office + cellphone redirection: 12345 Private + WhatsApp/Telegram: +49 176 94911008
Andrei Varykhalov Office: 14888
Urgent support (disasters, shutter, external equipment, etc.)
Hallendienst Office: 12984 Organization (badges, guesthouse, etc.)
User office Office: 12931